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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015837843.1_cds_XP_016506811.1_20004
CDS Infomation

[gene=LOC107824532] [db_xref=GeneID:107824532] [protein=protein decapping 5-like isoform X2] [protein_id=XP_016506811.1] [location=complement(join(334444..334593,334677..334781,334904..335098,335739..335810,336235..336300,336501..336566,337418..338323,338406..338477,341022..341122,344244..344388))] [gbkey=CDS]
Sequence

ATGGCAGCGGCGACAGTGACCGCGACCAAGACGGCCGACTCCTACATTGGGAGTCTCATT
TGTTTGGTTTCAAAATCCGATATTCGTTATGAAGGCTTTCTTTTCCATCTCGACTCTCAC
GATTCCACCATTGGTCTTCGTAACGTGAAATCTTTTGGGACAGAAGGACGAAGAACGGAT
GGACCTCAGGTCTTTCCGAGTGACAAAATCTATGAGTTCATATTCTTCCGAGGTAGTGAT
ATAAAGGATCTGCAGGTTATATCTTCTCCACCACCTCAAAGTACATCAGCTGTTCCCGAC
GATCCGGCGATTATACGGTCTCATTTTCCTCAACCCATACCTACAGCTATGGCCTCGACA
TCTCCTGGTGCTGCAACAGTAGCAAATGTTAGTACCAGTGCACAACCCATTCTCCCTGTT
ACACCTTTCCAGTTGAATCAGGCCCATGACCCATTGACATCAGGTTCTAGCCTTCCGGGC
TCATCGCTCCCTCCTCCACCTGTAAATATCAGTCGGCCTGCTGTGCCTAATTATTGGCCA
ACATTAATTGGGTCCTCAGGAGGAGTTTCTCATTTTCAACAGCACCGTTTTCCCCCGCCG
CCACAGAGTTTGGTGGCATCACTCCCCCTGGTTCAGCAGCAAGTGCAGTACCAAAATGTA
AATGCATCTGCAGCTGGAGGATCCAACACATCTGCAGCTGGAGTATCCAGCTTTTCTGGA
CACCATCATCCCTTGCTGCTGACTGGTACTACCAGCTCCCCAAATACACTGCCTCCCTTG
CTGCCAACACCTTCTGTTCAATCCAATCCCGGGCAGTTTGCTAAACTGGTGTCTCATTTG
TCATCTATTCCAATGCCAAATAATGGATCTAGTGCTCTTTCAAGTGTAGCAGCGCATCCT
GGCCCAAAAATGGCATCTCCTTTGCCAGAAGTACTTAATGCTACTCCGCCTCCAGTAACT
AATGAACCAAGTTCAGTTGATCTGACAATCTCTCAGACTGTAACATCTAGTGTAGAGACA
ACTGGTGTATCTTTCAGCAAGCAGTCAAAACTATCTCCCATGACAATTGAGGAACAGTCA
GGACTGAAACAGTCCTCTTCGTCTCAGTCACTGCAGACCACACATATCGATGCAAAGACT
GCTCAAGCATCAGTGGTGGAACCTCTGCCATCAGATAGCACAGAAAAAACCATGGGGTCA
TTGCCGAAATCCACAACTAAAACTGCGCATCGAGACCCTGCATCCACTAATCATAGTTAT
AGAGGCCGTGCACGAGGAAGGGGATATGCGGCAAATGGAGTTGCTTTATCCATACATCAA
AGCTCAAGAAACCAGGCGGTTGGAAGAGGAAATGAGTTCCACCTAAATGGTGTTCCGTTG
CGCAATCATGGCGATGCGGGAAGTCATTTTCGGGGACGTGGAGCTAAGAATTCCCGTTTC
AAAACAAGATTTAAGGAGGATTTTGATTTTGAGGCGATGAATGAAAAGTTCAATAAGGAA
GAGGTGTGGGACTTACTTGGCAAAAATAACAAAGCTGAATCAGATGACGGAAATGAGGAT
GACAAAGAGATGGATGGTGTTAAGGGTGAAGCCAGAGAAGTACATGTAAGAGACGATAGC
AAGCCCGTTTACTGTAAGGATGACTTTTTTGATTCTCTTTCTTGTGATGCACTTGATCAT
GATTCTGGGAAAGTGAAGCTCTCTGAACAAAGGAAAAAAGATGCTGAGACATTTGGAGAG
ATCCCAAAACCTCAACGAGGTCATGGACAGGGACCACGCTGGGCTGGGGCATCTCAAGGC
TCATATCGTGGCAGAGGACATGGCACTACACGAGGTGGTCGCGGTCGTGGAAGAGCAGTT
TGGGGCCGTGTCAGTTAA

Peptide Sequence

PEP ID

XP_016506811.1
PEP Infomation

PREDICTED: protein decapping 5-like isoform X2 [Nicotiana tabacum]
Sequence

MAAATVTATKTADSYIGSLICLVSKSDIRYEGFLFHLDSHDSTIGLRNVKSFGTEGRRTD
GPQVFPSDKIYEFIFFRGSDIKDLQVISSPPPQSTSAVPDDPAIIRSHFPQPIPTAMAST
SPGAATVANVSTSAQPILPVTPFQLNQAHDPLTSGSSLPGSSLPPPPVNISRPAVPNYWP
TLIGSSGGVSHFQQHRFPPPPQSLVASLPLVQQQVQYQNVNASAAGGSNTSAAGVSSFSG
HHHPLLLTGTTSSPNTLPPLLPTPSVQSNPGQFAKLVSHLSSIPMPNNGSSALSSVAAHP
GPKMASPLPEVLNATPPPVTNEPSSVDLTISQTVTSSVETTGVSFSKQSKLSPMTIEEQS
GLKQSSSSQSLQTTHIDAKTAQASVVEPLPSDSTEKTMGSLPKSTTKTAHRDPASTNHSY
RGRARGRGYAANGVALSIHQSSRNQAVGRGNEFHLNGVPLRNHGDAGSHFRGRGAKNSRF
KTRFKEDFDFEAMNEKFNKEEVWDLLGKNNKAESDDGNEDDKEMDGVKGEAREVHVRDDS
KPVYCKDDFFDSLSCDALDHDSGKVKLSEQRKKDAETFGEIPKPQRGHGQGPRWAGASQG
SYRGRGHGTTRGGRGRGRAVWGRVS

Transcript Sequence

Gene sequence data has not been registered.